Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| recq family atp-dependent dna helicase | CAY62_RS17575 | Not Available | Positive | 619262 - 619955 | 25147.7 |
| gnat family n-acetyltransferase | CAY62_RS17580 | Not Available | Negative | 620074 - 620556 | 18195.5 |
| trna (pseudouridine(54)-n(1))-methyltransferase trmy | CAY62_RS17585 | Not Available | Negative | 620579 - 621178 | 22263.9 |
| hlyd family secretion protein | CAY62_RS17590 | Not Available | Positive | 621318 - 622367 | 38177.2 |
| duf2955 domain-containing protein | CAY62_RS17595 | Not Available | Positive | 622380 - 623399 | 38378.0 |
| marr family winged helix-turn-helix transcriptional regulator | CAY62_RS17600 | Not Available | Positive | 623371 - 623826 | 17101.1 |
| duf1007 family protein | CAY62_RS17605 | Not Available | Positive | 624050 - 624706 | 24903.9 |
| nickel/cobalt transporter | CAY62_RS17610 | Not Available | Positive | 624729 - 625820 | 38665.4 |
| lipopolysaccharide biosynthesis protein | CAY62_RS17615 | Not Available | Negative | 625923 - 627221 | 49641.4 |
| deoxynucleoside kinase | CAY62_RS17620 | Not Available | Positive | 627535 - 628197 | 24814.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
