Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tn3-like element tnec1 family transposase | CAY62_RS20695 | Not Available | Positive | 61481 - 64459 | 112823.0 |
| n-6 dna methylase | CAY62_RS20700 | Not Available | Negative | 64495 - 65198 | 24158.5 |
| hypothetical protein | CAY62_RS22140 | Not Available | Negative | 65254 - 65502 | 9678.7 |
| helix-turn-helix domain-containing protein | CAY62_RS20710 | Not Available | Positive | 66078 - 66950 | 33461.3 |
| hypothetical protein | CAY62_RS20715 | Not Available | Positive | 66963 - 67172 | 8311.15 |
| hypothetical protein | CAY62_RS21695 | Not Available | Positive | 67444 - 67611 | 6620.25 |
| fimbrial protein | CAY62_RS20720 | Not Available | Positive | 67766 - 68320 | 19552.4 |
| pefc/afrb family outer membrane usher protein | CAY62_RS20725 | Not Available | Positive | 68317 - 70677 | 84794.2 |
| fimbria/pilus periplasmic chaperone | CAY62_RS20730 | Not Available | Positive | 70667 - 71374 | 26318.0 |
| duf5462 family protein | CAY62_RS20735 | Not Available | Positive | 71386 - 71907 | 19184.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
