Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CAY62_RS17375 | Not Available | Negative | 581222 - 581539 | 11743.9 |
| glutathione synthase | CAY62_RS17380 | Not Available | Negative | 581633 - 583075 | 53508.2 |
| helix-turn-helix domain-containing protein | CAY62_RS17385 | Not Available | Negative | 583273 - 583500 | 8392.29 |
| duf2975 domain-containing protein | CAY62_RS17390 | Not Available | Negative | 583510 - 584058 | 20870.9 |
| substrate-binding domain-containing protein | CAY62_RS17395 | Not Available | Positive | 584365 - 585363 | 36203.2 |
| recq family atp-dependent dna helicase | CAY62_RS17400 | Not Available | Positive | 585843 - 586153 | 10794.3 |
| voc family protein | CAY62_RS17405 | Not Available | Negative | 586223 - 586609 | 13804.5 |
| excinuclease abc subunit uvrb | CAY62_RS17410 | Not Available | Negative | 586698 - 588650 | 74058.7 |
| gh92 family glycosyl hydrolase | CAY62_RS17415 | Not Available | Positive | 588924 - 591386 | 92233.5 |
| lbf_2804 family protein | CAY62_RS22035 | Not Available | Positive | 592053 - 592673 | 23946.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
