Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2750 domain-containing protein | CAY62_RS17325 | Not Available | Positive | 573289 - 573681 | 15123.7 |
| hypothetical protein | CAY62_RS17330 | Not Available | Negative | 573927 - 574802 | 32075.4 |
| recq family atp-dependent dna helicase | CAY62_RS17335 | Not Available | Negative | 574832 - 575611 | 28953.6 |
| pyridoxal phosphate-dependent decarboxylase family protein | CAY62_RS17340 | Not Available | Negative | 575728 - 576822 | 39838.0 |
| aspartate-semialdehyde dehydrogenase | CAY62_RS17345 | Not Available | Positive | 577094 - 578230 | 41518.1 |
| hypothetical protein | CAY62_RS17350 | Not Available | Negative | 578323 - 578658 | 12616.3 |
| phosphoribosylglycinamide formyltransferase | CAY62_RS17355 | Not Available | Positive | 578909 - 579700 | 29663.6 |
| phosphoribosylglycinamide formyltransferase | CAY62_RS17360 | Not Available | Positive | 580029 - 580820 | 29921.9 |
| Trna-ser | Not Available | Not Available | Positive | 580949 - 581039 | Not Available |
| Trna-asp | Not Available | Not Available | Positive | 581083 - 581159 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
