Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| eama family transporter rard | CAY62_RS17220 | Not Available | Positive | 502651 - 503559 | 33395.1 |
| nucleotide pyrophosphohydrolase | CAY62_RS17225 | Not Available | Positive | 503593 - 503940 | 13214.6 |
| duf2960 domain-containing protein | CAY62_RS17230 | Not Available | Negative | 503986 - 504249 | 10003.0 |
| eal domain-containing protein | CAY62_RS17235 | Not Available | Negative | 504333 - 506354 | 75187.4 |
| geved domain-containing protein | CAY62_RS17240 | Not Available | Positive | 506820 - 509414 | 91641.9 |
| anaerobic ribonucleoside-triphosphate reductase-activating protein | CAY62_RS17245 | Not Available | Negative | 509507 - 509983 | 17964.2 |
| anaerobic ribonucleoside-triphosphate reductase | CAY62_RS17250 | Not Available | Negative | 510077 - 512215 | 79894.6 |
| ggdef domain-containing protein | CAY62_RS17255 | Not Available | Positive | 512542 - 513645 | 42170.0 |
| endonuclease/exonuclease/phosphatase family protein | CAY62_RS17260 | Not Available | Positive | 513704 - 514510 | 31644.2 |
| sigma-54-dependent transcriptional regulator | CAY62_RS17265 | Not Available | Negative | 514514 - 515854 | 51313.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
