Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyl hydrolase family 18 protein | CAY62_RS17075 | Not Available | Negative | 469852 - 472197 | 84572.5 |
| pyrimidine 5'-nucleotidase | CAY62_RS17080 | Not Available | Positive | 472706 - 473380 | 25604.8 |
| branched-chain amino acid transport system ii carrier protein | CAY62_RS17085 | Not Available | Positive | 473691 - 475004 | 46418.3 |
| formate c-acetyltransferase | CAY62_RS17090 | Not Available | Positive | 475289 - 477586 | 85948.1 |
| branched-chain amino acid transport system ii carrier protein | CAY62_RS17095 | Not Available | Positive | 478087 - 479430 | 47333.2 |
| semisweet transporter | CAY62_RS17100 | Not Available | Positive | 479523 - 479816 | 10775.6 |
| l-asparaginase 2 | CAY62_RS17105 | Not Available | Negative | 479897 - 480961 | 37995.2 |
| hypothetical protein | CAY62_RS17110 | Not Available | Negative | 481223 - 481471 | 9339.06 |
| preprotein translocase subunit secy | CAY62_RS17115 | Not Available | Positive | 481830 - 482849 | 37473.1 |
| phospholipase d family protein | CAY62_RS17120 | Not Available | Positive | 482989 - 484587 | 59905.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
