Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| response regulator | CAY62_RS17025 | Not Available | Negative | 458165 - 458860 | 26101.7 |
| atp-binding protein | CAY62_RS17030 | Not Available | Negative | 458853 - 460319 | 54588.0 |
| potassium transporter kup | CAY62_RS17035 | Not Available | Negative | 460441 - 462303 | 69047.9 |
| mfs transporter | CAY62_RS17040 | Not Available | Negative | 462560 - 463933 | 50502.1 |
| gntr family transcriptional regulator | CAY62_RS17045 | Not Available | Negative | 464601 - 465338 | 27409.6 |
| adp-ribosylglycohydrolase family protein | CAY62_RS17050 | Not Available | Positive | 465489 - 466523 | 37020.1 |
| purine-cytosine permease family protein | CAY62_RS17055 | Not Available | Positive | 466536 - 467933 | 49494.0 |
| pfkb family carbohydrate kinase | CAY62_RS17060 | Not Available | Positive | 467933 - 468889 | 34532.4 |
| recq family atp-dependent dna helicase | CAY62_RS17065 | Not Available | Negative | 469176 - 469313 | 4953.29 |
| Trna-gly | Not Available | Not Available | Positive | 469530 - 469604 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
