Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-6 dna methylase | CAY62_RS20645 | Not Available | Negative | 52032 - 52475 | 17225.4 |
| is200/is605 family transposase | CAY62_RS20650 | Not Available | Positive | 52533 - 52961 | 16215.8 |
| helix-turn-helix domain-containing protein | CAY62_RS20655 | Not Available | Negative | 53085 - 53306 | 8265.18 |
| hok/gef family protein | CAY62_RS20660 | Not Available | Positive | 53728 - 53877 | 5504.1 |
| dini-like family protein | CAY62_RS20665 | Not Available | Negative | 53957 - 54205 | 9282.19 |
| hypothetical protein | CAY62_RS20670 | Not Available | Positive | 54807 - 54989 | 7275.73 |
| yeca family protein | CAY62_RS20675 | Not Available | Positive | 55423 - 57861 | 94238.3 |
| n-6 dna methylase | CAY62_RS20680 | Not Available | Negative | 58129 - 58614 | 18912.0 |
| rpn family recombination-promoting nuclease/putative transposase | CAY62_RS20685 | Not Available | Positive | 58891 - 59871 | 37473.3 |
| recombinase family protein | CAY62_RS20690 | Not Available | Negative | 60685 - 61326 | 24933.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
