Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| is21 family transposase | CAY62_RS16975 | Not Available | Positive | 449920 - 450963 | 40000.6 |
| is21-like element helper atpase istb | CAY62_RS16980 | Not Available | Positive | 450950 - 451708 | 28681.8 |
| recq family atp-dependent dna helicase | CAY62_RS16985 | Not Available | Negative | 451778 - 451954 | 6665.05 |
| succinylglutamate desuccinylase/aspartoacylase family protein | CAY62_RS16990 | Not Available | Negative | 452233 - 453246 | 37381.7 |
| putative basic amino acid antiporter yfcc | CAY62_RS16995 | Not Available | Negative | 453321 - 454796 | 52743.4 |
| pyroglutamyl-peptidase i | CAY62_RS17000 | Not Available | Positive | 455232 - 455870 | 22972.4 |
| hypothetical protein | CAY62_RS17005 | Not Available | Positive | 456034 - 456795 | 28872.6 |
| thiol-disulfide oxidoreductase dcc family protein | CAY62_RS17010 | Not Available | Positive | 456897 - 457286 | 15224.3 |
| twin-arginine translocase tata/tate family subunit | CAY62_RS17015 | Not Available | Negative | 457519 - 457737 | 7783.52 |
| hypothetical protein | CAY62_RS17020 | Not Available | Negative | 457779 - 458057 | 10568.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
