Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chitinase | CAY62_RS16925 | Not Available | Negative | 438711 - 440399 | 61975.8 |
| c-type cytochrome | CAY62_RS16930 | Not Available | Positive | 440682 - 441005 | 12176.8 |
| cytochrome-c oxidase, cbb3-type subunit i | CAY62_RS16935 | Not Available | Positive | 441041 - 442453 | 54416.1 |
| cytochrome-c oxidase, cbb3-type subunit ii | CAY62_RS16940 | Not Available | Positive | 442455 - 443054 | 22305.9 |
| cytochrome-c oxidase, cbb3-type subunit iii | CAY62_RS16945 | Not Available | Positive | 443065 - 445269 | 81210.5 |
| sulfite exporter taue/safe family protein | CAY62_RS16950 | Not Available | Negative | 445274 - 446005 | 26246.3 |
| lysr family transcriptional regulator | CAY62_RS16955 | Not Available | Negative | 446262 - 447164 | 34796.1 |
| dead/deah box helicase | CAY62_RS16960 | Not Available | Negative | 447342 - 448625 | 47652.0 |
| molybdopterin-dependent oxidoreductase | CAY62_RS16965 | Not Available | Negative | 448725 - 449207 | 18298.7 |
| recq family atp-dependent dna helicase | CAY62_RS16970 | Not Available | Negative | 449254 - 449830 | 20256.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
