Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mmcq/yjbr family dna-binding protein | CAY62_RS16880 | Not Available | Negative | 429994 - 430365 | 14033.5 |
| low-specificity l-threonine aldolase | CAY62_RS16885 | Not Available | Positive | 430491 - 431495 | 36238.4 |
| nfed family protein | CAY62_RS16890 | Not Available | Negative | 431591 - 432040 | 16837.8 |
| spfh domain-containing protein | CAY62_RS16895 | Not Available | Negative | 432043 - 432963 | 33412.6 |
| elyc/sana/ydcf family protein | CAY62_RS16900 | Not Available | Positive | 433247 - 434227 | 37287.5 |
| lysr family transcriptional regulator | CAY62_RS22030 | Not Available | Positive | 434365 - 434526 | 5878.16 |
| hypothetical protein | CAY62_RS16905 | Not Available | Positive | 434600 - 434917 | 12656.5 |
| hypothetical protein | CAY62_RS16910 | Not Available | Positive | 434947 - 435276 | 12777.6 |
| dash family cryptochrome | CAY62_RS16915 | Not Available | Positive | 435347 - 436657 | 51511.7 |
| sensor domain-containing diguanylate cyclase | CAY62_RS16920 | Not Available | Positive | 437243 - 438631 | 52855.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
