Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gntr family transcriptional regulator | CAY62_RS16830 | Not Available | Negative | 419666 - 420364 | 26826.3 |
| glycine cleavage system aminomethyltransferase gcvt | CAY62_RS16835 | Not Available | Negative | 420738 - 421856 | 40859.7 |
| glycine cleavage system protein gcvh | CAY62_RS16840 | Not Available | Positive | 422137 - 422520 | 13596.7 |
| aminomethyl-transferring glycine dehydrogenase | CAY62_RS16845 | Not Available | Positive | 422641 - 425514 | 105658.0 |
| tetratricopeptide repeat protein | CAY62_RS16850 | Not Available | Negative | 425819 - 426586 | 29352.0 |
| hypothetical protein | CAY62_RS16855 | Not Available | Negative | 426765 - 427400 | 23822.3 |
| lpo_1073/vpar_1526 family protein | CAY62_RS16860 | Not Available | Negative | 427489 - 428331 | 31102.4 |
| hypothetical protein | CAY62_RS16865 | Not Available | Negative | 428347 - 428568 | 8124.66 |
| cytosolic protein | CAY62_RS16870 | Not Available | Positive | 429125 - 429463 | 12461.7 |
| hypothetical protein | CAY62_RS16875 | Not Available | Positive | 429689 - 429955 | 9748.26 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
