Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-ribose pyranase | CAY62_RS16780 | Not Available | Positive | 409548 - 409967 | 15158.4 |
| ribose abc transporter atp-binding protein rbsa | CAY62_RS16785 | Not Available | Positive | 410027 - 411532 | 54800.5 |
| ribose abc transporter permease | CAY62_RS16790 | Not Available | Positive | 411529 - 412515 | 34538.1 |
| ribose abc transporter substrate-binding protein rbsb | CAY62_RS16795 | Not Available | Positive | 412589 - 413467 | 30677.0 |
| ribokinase | CAY62_RS16800 | Not Available | Positive | 413686 - 414606 | 32055.4 |
| substrate-binding domain-containing protein | CAY62_RS16805 | Not Available | Positive | 414793 - 415797 | 37366.1 |
| recq family atp-dependent dna helicase | CAY62_RS16810 | Not Available | Negative | 416129 - 416585 | 16994.4 |
| is21 family transposase | CAY62_RS16815 | Not Available | Positive | 416673 - 417716 | 40000.6 |
| is21-like element helper atpase istb | CAY62_RS16820 | Not Available | Positive | 417703 - 418461 | 28681.8 |
| recq family atp-dependent dna helicase | CAY62_RS16825 | Not Available | Negative | 418529 - 419017 | 18103.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
