Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| napc/nirt family cytochrome c | CAY62_RS16730 | Not Available | Positive | 396638 - 397732 | 40514.7 |
| molybdopterin guanine dinucleotide-containing s/n-oxide reductase | CAY62_RS16735 | Not Available | Positive | 397754 - 400201 | 90288.4 |
| rna-guided endonuclease insq/tnpb family protein | CAY62_RS16740 | Not Available | Negative | 400328 - 401413 | 41999.8 |
| vanz family protein | CAY62_RS16745 | Not Available | Positive | 401643 - 402005 | 13520.0 |
| vc0807 family protein | CAY62_RS16750 | Not Available | Negative | 402036 - 402722 | 25474.8 |
| carbamate kinase | CAY62_RS16755 | Not Available | Positive | 403215 - 404144 | 33275.7 |
| dmsc/ynfh family molybdoenzyme membrane anchor subunit | CAY62_RS16760 | Not Available | Negative | 404923 - 405681 | 27320.4 |
| hypothetical protein | CAY62_RS21445 | Not Available | Positive | 405861 - 406001 | 5198.27 |
| nad-dependent malic enzyme | CAY62_RS16765 | Not Available | Negative | 406109 - 407824 | 63688.0 |
| tobe domain-containing protein | CAY62_RS16770 | Not Available | Positive | 408124 - 408927 | 28854.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
