Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | CAY62_RS16680 | Not Available | Positive | 386485 - 387318 | 29337.0 |
| abc transporter atp-binding protein | CAY62_RS16685 | Not Available | Positive | 387328 - 388095 | 28737.9 |
| abc transporter permease | CAY62_RS16690 | Not Available | Positive | 388088 - 388879 | 29165.3 |
| abc transporter substrate-binding protein | CAY62_RS16695 | Not Available | Positive | 388914 - 389861 | 34775.7 |
| tena family protein | CAY62_RS16700 | Not Available | Positive | 389916 - 390575 | 24822.4 |
| potassium channel family protein | CAY62_RS16705 | Not Available | Positive | 390991 - 391653 | 24079.5 |
| trkh family potassium uptake protein | CAY62_RS16710 | Not Available | Positive | 391650 - 393017 | 49262.8 |
| hypothetical protein | CAY62_RS16715 | Not Available | Negative | 393080 - 393913 | 31905.4 |
| 2og-fe(ii) oxygenase | CAY62_RS16720 | Not Available | Positive | 394134 - 394736 | 23819.0 |
| endonuclease/exonuclease/phosphatase family protein | CAY62_RS16725 | Not Available | Positive | 394934 - 396313 | 50742.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
