Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CAY62_RS16535 | Not Available | Negative | 360610 - 360939 | 12368.0 |
| hypothetical protein | CAY62_RS16540 | Not Available | Positive | 361167 - 361505 | 13014.9 |
| cupin domain-containing protein | CAY62_RS16545 | Not Available | Positive | 361518 - 361880 | 13868.8 |
| recq family atp-dependent dna helicase | CAY62_RS16550 | Not Available | Positive | 362018 - 362452 | 16408.3 |
| is3 family transposase | CAY62_RS16555 | Not Available | Negative | 362479 - 363330 | 32828.9 |
| transposase | CAY62_RS16560 | Not Available | Negative | 363327 - 363623 | 11187.5 |
| dna-methyltransferase | CAY62_RS16565 | Not Available | Positive | 363756 - 364430 | 26209.4 |
| hd domain-containing protein | CAY62_RS16570 | Not Available | Negative | 364419 - 365048 | 23726.2 |
| mate family efflux transporter | CAY62_RS16575 | Not Available | Negative | 365116 - 366465 | 48807.3 |
| nucleoside triphosphate pyrophosphohydrolase family protein | CAY62_RS16580 | Not Available | Negative | 366609 - 367187 | 22036.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
