Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CAY62_RS20595 | Not Available | Positive | 40480 - 41190 | 27259.0 |
| lpd7 domain-containing protein | CAY62_RS20600 | Not Available | Positive | 41180 - 44473 | 126663.0 |
| hypothetical protein | CAY62_RS20605 | Not Available | Positive | 44872 - 45438 | 21374.7 |
| stbb family protein | CAY62_RS20610 | Not Available | Positive | 45543 - 46241 | 26169.4 |
| hypothetical protein | CAY62_RS20615 | Not Available | Positive | 46252 - 46809 | 20582.0 |
| p-type dna transfer protein virb5 | CAY62_RS20620 | Not Available | Positive | 46916 - 47668 | 28422.6 |
| type iv secretion system protein | CAY62_RS20625 | Not Available | Positive | 47668 - 48696 | 37373.9 |
| ardc family protein | CAY62_RS20630 | Not Available | Negative | 49245 - 50084 | 31768.7 |
| is21 family transposase | CAY62_RS20635 | Not Available | Positive | 50175 - 51218 | 40000.6 |
| is21-like element helper atpase istb | CAY62_RS20640 | Not Available | Positive | 51205 - 51963 | 28681.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
