Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cation diffusion facilitator family transporter | CAY62_RS16440 | Not Available | Negative | 340817 - 341734 | 34151.3 |
| hypothetical protein | CAY62_RS16445 | Not Available | Negative | 342048 - 342500 | 17217.2 |
| l,d-transpeptidase family protein | CAY62_RS16450 | Not Available | Negative | 342648 - 343550 | 33015.6 |
| hypothetical protein | CAY62_RS16455 | Not Available | Negative | 344000 - 344470 | 18341.1 |
| protein-methionine-sulfoxide reductase catalytic subunit msrp | CAY62_RS16460 | Not Available | Positive | 344609 - 345598 | 37296.6 |
| protein-methionine-sulfoxide reductase heme-binding subunit msrq | CAY62_RS16465 | Not Available | Positive | 345598 - 346218 | 23776.5 |
| hypothetical protein | CAY62_RS16470 | Not Available | Positive | 346323 - 346940 | 24203.3 |
| hypothetical protein | CAY62_RS16475 | Not Available | Positive | 347082 - 347522 | 16155.2 |
| amidohydrolase | CAY62_RS16480 | Not Available | Positive | 347745 - 349142 | 50964.7 |
| hypothetical protein | CAY62_RS16485 | Not Available | Negative | 349702 - 350487 | 29228.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
