Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atpase rava domain-containing protein | CAY62_RS16395 | Not Available | Negative | 331566 - 333218 | 62368.4 |
| hypothetical protein | CAY62_RS22005 | Not Available | Positive | 333710 - 334000 | 10462.5 |
| ggdef domain-containing protein | CAY62_RS22010 | Not Available | Positive | 334009 - 334404 | 15224.8 |
| sulfurtransferase | CAY62_RS16405 | Not Available | Negative | 334672 - 335526 | 31668.5 |
| duf5718 family protein | CAY62_RS16410 | Not Available | Negative | 335700 - 336530 | 30557.0 |
| hypothetical protein | CAY62_RS16415 | Not Available | Positive | 336750 - 337103 | 13508.2 |
| recq family atp-dependent dna helicase | CAY62_RS16420 | Not Available | Negative | 337207 - 337581 | 13320.5 |
| biotin/lipoyl-binding protein | CAY62_RS16425 | Not Available | Negative | 337583 - 337924 | 11940.5 |
| duf1097 domain-containing protein | CAY62_RS16430 | Not Available | Negative | 338335 - 338817 | 17022.2 |
| beta-n-acetylhexosaminidase | CAY62_RS16435 | Not Available | Positive | 339355 - 340359 | 36830.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
