Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| deoxyribodipyrimidine photo-lyase | CAY62_RS16345 | Not Available | Negative | 319691 - 321175 | 57212.0 |
| merr family transcriptional regulator | CAY62_RS16350 | Not Available | Negative | 321176 - 321997 | 30806.9 |
| ybga family protein | CAY62_RS16355 | Not Available | Negative | 322019 - 322966 | 36306.0 |
| response regulator transcription factor | CAY62_RS16360 | Not Available | Positive | 323280 - 323987 | 26667.4 |
| sensor histidine kinase | CAY62_RS16365 | Not Available | Positive | 324002 - 325339 | 51484.4 |
| phosphoethanolamine transferase | CAY62_RS16370 | Not Available | Positive | 325428 - 327101 | 63740.9 |
| glycine zipper family protein | CAY62_RS16375 | Not Available | Positive | 327201 - 327599 | 13548.2 |
| 23s rrna (adenine(1618)-n(6))-methyltransferase rlmf | CAY62_RS16380 | Not Available | Negative | 327688 - 328686 | 37119.9 |
| transporter substrate-binding domain-containing protein | CAY62_RS16385 | Not Available | Positive | 328903 - 329997 | 41284.9 |
| atpase rava stimulator viaa | CAY62_RS16390 | Not Available | Negative | 330080 - 331537 | 55951.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
