Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| voc family protein | CAY62_RS16295 | Not Available | Negative | 310887 - 311282 | 15201.9 |
| duf2813 domain-containing protein | CAY62_RS16300 | Not Available | Positive | 311490 - 313190 | 65737.2 |
| duf3833 domain-containing protein | CAY62_RS16305 | Not Available | Negative | 313213 - 313821 | 23369.9 |
| chalcone isomerase family protein | CAY62_RS16310 | Not Available | Negative | 313825 - 314334 | 19889.7 |
| duf2878 domain-containing protein | CAY62_RS16315 | Not Available | Negative | 314379 - 314903 | 19758.2 |
| sam-dependent methyltransferase | CAY62_RS16320 | Not Available | Negative | 314940 - 316190 | 47761.9 |
| recq family atp-dependent dna helicase | CAY62_RS16325 | Not Available | Negative | 316210 - 317086 | 31597.9 |
| nad(p)/fad-dependent oxidoreductase | CAY62_RS16330 | Not Available | Negative | 317086 - 318393 | 49987.2 |
| sdr family nad(p)-dependent oxidoreductase | CAY62_RS16335 | Not Available | Negative | 318390 - 319169 | 28236.3 |
| nuclear transport factor 2 family protein | CAY62_RS16340 | Not Available | Negative | 319166 - 319606 | 16987.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
