Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| s24 family peptidase | CAY62_RS20315 | Not Available | Positive | 93119 - 93730 | 23000.7 |
| hypothetical protein | CAY62_RS20320 | Not Available | Positive | 94155 - 94988 | 32383.9 |
| is91 family transposase | CAY62_RS20325 | Not Available | Negative | 95835 - 97034 | 47058.4 |
| hypothetical protein | CAY62_RS20330 | Not Available | Negative | 97043 - 97339 | 11289.4 |
| hypothetical protein | CAY62_RS20335 | Not Available | Positive | 97618 - 97911 | 9964.56 |
| is1 family transposase | CAY62_RS20340 | Not Available | Negative | 98086 - 98638 | 19616.6 |
| is1 family transposase | CAY62_RS20345 | Not Available | Negative | 98793 - 99263 | 18524.9 |
| is1 family transposase | CAY62_RS20350 | Not Available | Negative | 99300 - 102277 | 111481.0 |
| recombinase family protein | CAY62_RS20355 | Not Available | Positive | 102432 - 103073 | 24933.8 |
| hypothetical protein | CAY62_RS20360 | Not Available | Negative | 103119 - 103400 | 10756.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
