Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CAY62_RS20265 | Not Available | Positive | 86522 - 86914 | 14582.9 |
| hypothetical protein | CAY62_RS20270 | Not Available | Positive | 86892 - 87905 | 38894.6 |
| hypothetical protein | CAY62_RS20275 | Not Available | Positive | 87911 - 88567 | 24485.9 |
| flim/flin family flagellar motor c-terminal domain-containing protein | CAY62_RS20280 | Not Available | Positive | 88582 - 88797 | 7910.73 |
| is1 family transposase | CAY62_RS20285 | Not Available | Negative | 88864 - 89760 | 33531.1 |
| is21 family transposase | CAY62_RS20290 | Not Available | Positive | 89850 - 90893 | 40000.6 |
| is21-like element helper atpase istb | CAY62_RS20295 | Not Available | Positive | 90880 - 91638 | 28681.8 |
| is1 family transposase | CAY62_RS20300 | Not Available | Negative | 91707 - 91955 | 9787.16 |
| is1 family transposase | CAY62_RS20305 | Not Available | Positive | 92013 - 92278 | 9448.79 |
| is1 family transposase | CAY62_RS20310 | Not Available | Positive | 92338 - 92646 | 11690.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
