Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ycei family protein | CAY62_RS16145 | Not Available | Negative | 281895 - 282455 | 20304.1 |
| cytochrome b | CAY62_RS16150 | Not Available | Negative | 282452 - 282994 | 20612.3 |
| ivy family c-type lysozyme inhibitor | CAY62_RS16155 | Not Available | Positive | 283121 - 283579 | 16501.7 |
| hypothetical protein | CAY62_RS16160 | Not Available | Negative | 283638 - 283991 | 13877.3 |
| tyrosine-type recombinase/integrase | CAY62_RS16165 | Not Available | Positive | 284278 - 285684 | 53728.6 |
| nramp family divalent metal transporter | CAY62_RS16170 | Not Available | Negative | 285741 - 286982 | 44416.8 |
| rna polymerase sigma factor rpos | CAY62_RS16175 | Not Available | Positive | 287452 - 288336 | 33527.9 |
| hypothetical protein | CAY62_RS16180 | Not Available | Positive | 288536 - 288754 | 8285.41 |
| chromate efflux transporter | CAY62_RS16185 | Not Available | Negative | 288853 - 290007 | 41289.7 |
| is21 family transposase | CAY62_RS16190 | Not Available | Positive | 290087 - 291130 | 40000.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
