Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| is1 family transposase | CAY62_RS20170 | Not Available | Positive | 64494 - 65066 | 22230.2 |
| protein kinase domain-containing protein | CAY62_RS20175 | Not Available | Positive | 65136 - 66140 | 37886.8 |
| is1 family transposase | CAY62_RS20180 | Not Available | Positive | 66348 - 67252 | 33162.8 |
| is1 family transposase | CAY62_RS20185 | Not Available | Positive | 67376 - 67786 | 15385.8 |
| is1 family transposase | CAY62_RS21675 | Not Available | Negative | 67765 - 67863 | 3821.58 |
| is1 family transposase | CAY62_RS21680 | Not Available | Positive | 67921 - 68142 | 8439.45 |
| hypothetical protein | CAY62_RS20195 | Not Available | Negative | 68312 - 69130 | 30827.3 |
| hypothetical protein | CAY62_RS20200 | Not Available | Negative | 69230 - 70510 | 48299.2 |
| hypothetical protein | CAY62_RS20205 | Not Available | Negative | 70697 - 71971 | 49034.8 |
| vspd | CAY62_RS20210 | Not Available | Positive | 72657 - 73706 | 37167.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
