Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna helicase ii | CAY62_RS14820 | Not Available | Positive | 3131790 - 3133961 | 82507.0 |
| is1 family transposase | CAY62_RS19825 | Not Available | Positive | 1017 - 1322 | 11975.5 |
| h-ns family nucleoid-associated regulatory protein | CAY62_RS19830 | Not Available | Negative | 1731 - 1925 | 7232.53 |
| basic amino acid/polyamine antiporter | CAY62_RS19835 | Not Available | Positive | 2405 - 3811 | 51170.5 |
| phosphatidylserine decarboxylase family protein | CAY62_RS19840 | Not Available | Positive | 3909 - 5267 | 50600.8 |
| diguanylate cyclase domain-containing protein | CAY62_RS19845 | Not Available | Positive | 5346 - 5771 | 16462.9 |
| hypothetical protein | CAY62_RS19850 | Not Available | Positive | 5842 - 6120 | 10745.9 |
| is1 family transposase | CAY62_RS19855 | Not Available | Positive | 6181 - 6432 | 9640.44 |
| fic family protein | CAY62_RS19860 | Not Available | Positive | 6701 - 7804 | 41982.1 |
| hypothetical protein | CAY62_RS19865 | Not Available | Negative | 8733 - 9053 | 11887.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
