Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| stress response translation initiation inhibitor ycih | CAY62_RS16105 | Not Available | Positive | 272937 - 273248 | 11046.6 |
| linear amide c-n hydrolase | CAY62_RS16110 | Not Available | Negative | 273392 - 273625 | 8008.79 |
| hypothetical protein | CAY62_RS16115 | Not Available | Negative | 273725 - 274945 | 45605.2 |
| c40 family peptidase | CAY62_RS16120 | Not Available | Positive | 275210 - 275764 | 21685.2 |
| helix-turn-helix domain-containing protein | CAY62_RS21440 | Not Available | Positive | 276159 - 276317 | 6327.92 |
| hypothetical protein | CAY62_RS21625 | Not Available | Negative | 276395 - 276571 | 6892.18 |
| sodium:solute symporter | CAY62_RS16125 | Not Available | Positive | 277115 - 278650 | 54509.2 |
| fad-binding protein | CAY62_RS16130 | Not Available | Positive | 278625 - 280283 | 61623.2 |
| gdsl-type esterase/lipase family protein | CAY62_RS16135 | Not Available | Positive | 280286 - 281095 | 30875.2 |
| duf305 domain-containing protein | CAY62_RS16140 | Not Available | Negative | 281155 - 281766 | 22689.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
