Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | CAY62_RS14620 | Not Available | Positive | 3089044 - 3090021 | 35596.3 |
| abc transporter permease | CAY62_RS14625 | Not Available | Positive | 3090024 - 3090965 | 34686.9 |
| yjih family protein | CAY62_RS14630 | Not Available | Negative | 3091020 - 3092387 | 49083.5 |
| iron-containing alcohol dehydrogenase | CAY62_RS14635 | Not Available | Positive | 3092873 - 3094024 | 40861.0 |
| glutathione-disulfide reductase | CAY62_RS14640 | Not Available | Negative | 3094187 - 3095542 | 48524.2 |
| 23s rrna (adenine(2030)-n(6))-methyltransferase rlmj | CAY62_RS14645 | Not Available | Negative | 3095715 - 3096554 | 32170.7 |
| oligopeptidase a | CAY62_RS14650 | Not Available | Positive | 3096752 - 3098794 | 76700.9 |
| gnat family n-acetyltransferase | CAY62_RS14655 | Not Available | Negative | 3098869 - 3099339 | 18002.4 |
| crp/fnr family transcriptional regulator | CAY62_RS14660 | Not Available | Negative | 3099422 - 3099991 | 22194.9 |
| guanosine-5'-triphosphate,3'-diphosphate diphosphatase | CAY62_RS14665 | Not Available | Negative | 3100038 - 3101537 | 55624.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
