Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-processing protein dpra | CAY62_RS14470 | Not Available | Positive | 3058484 - 3059578 | 39165.6 |
| duf494 family protein | CAY62_RS14475 | Not Available | Positive | 3059581 - 3060054 | 18422.9 |
| topoisomerase dna-binding c4 zinc finger domain-containing protein | CAY62_RS14480 | Not Available | Positive | 3060165 - 3060722 | 20912.2 |
| 5-(carboxyamino)imidazole ribonucleotide synthase | CAY62_RS14485 | Not Available | Negative | 3060790 - 3061911 | 40766.9 |
| 5-(carboxyamino)imidazole ribonucleotide mutase | CAY62_RS14490 | Not Available | Negative | 3061914 - 3062399 | 16898.4 |
| l-threonylcarbamoyladenylate synthase | CAY62_RS14495 | Not Available | Positive | 3062593 - 3063150 | 20208.0 |
| oxygen-dependent coproporphyrinogen oxidase | CAY62_RS14500 | Not Available | Positive | 3063154 - 3064065 | 35287.5 |
| shikimate dehydrogenase | CAY62_RS14505 | Not Available | Positive | 3064074 - 3064901 | 29631.4 |
| duf1488 domain-containing protein | CAY62_RS14510 | Not Available | Positive | 3064908 - 3065174 | 10121.0 |
| gamma carbonic anhydrase family protein | CAY62_RS14515 | Not Available | Negative | 3065164 - 3065715 | 20191.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
