Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yihd family protein | CAY62_RS14420 | Not Available | Negative | 3048684 - 3048950 | 10248.5 |
| hypothetical protein | CAY62_RS21600 | Not Available | Negative | 3049126 - 3049299 | 6395.45 |
| fadr/gntr family transcriptional regulator | CAY62_RS14430 | Not Available | Positive | 3049680 - 3050354 | 25693.0 |
| paqr family membrane homeostasis protein trha | CAY62_RS14435 | Not Available | Positive | 3050520 - 3051176 | 23938.5 |
| trkh family potassium uptake protein | CAY62_RS14440 | Not Available | Negative | 3051231 - 3052676 | 51861.4 |
| trk system potassium transporter trka | CAY62_RS14445 | Not Available | Negative | 3052683 - 3054059 | 50219.6 |
| 16s rrna (cytosine(967)-c(5))-methyltransferase rsmb | CAY62_RS14450 | Not Available | Negative | 3054249 - 3055526 | 47391.9 |
| methionyl-trna formyltransferase | CAY62_RS14455 | Not Available | Negative | 3055665 - 3056609 | 34350.4 |
| peptide deformylase | CAY62_RS14460 | Not Available | Negative | 3056622 - 3057134 | 19091.8 |
| lysm peptidoglycan-binding domain-containing protein | CAY62_RS14465 | Not Available | Positive | 3057423 - 3058481 | 39978.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
