Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dihydroxy-acid dehydratase | CAY62_RS14370 | Not Available | Negative | 3036635 - 3038476 | 65834.4 |
| branched-chain amino acid transaminase | CAY62_RS14375 | Not Available | Negative | 3038586 - 3039515 | 33966.4 |
| acetolactate synthase 2 small subunit | CAY62_RS14380 | Not Available | Negative | 3039555 - 3039812 | 9743.02 |
| acetolactate synthase 2 catalytic subunit | CAY62_RS14385 | Not Available | Negative | 3039815 - 3041461 | 59370.6 |
| hypothetical protein | CAY62_RS14390 | Not Available | Negative | 3042005 - 3042718 | 25531.9 |
| imma/irre family metallo-endopeptidase | CAY62_RS14395 | Not Available | Negative | 3042794 - 3043288 | 19070.7 |
| yifb family mg chelatase-like aaa atpase | CAY62_RS14400 | Not Available | Positive | 3043812 - 3045344 | 55124.7 |
| thiol:disulfide interchange protein dsba/dsbl | CAY62_RS14405 | Not Available | Negative | 3045437 - 3046039 | 22436.1 |
| serine/threonine protein kinase | CAY62_RS14410 | Not Available | Negative | 3046126 - 3047115 | 38582.6 |
| cytochrome c oxidase accessory protein ccog | CAY62_RS14415 | Not Available | Negative | 3047158 - 3048495 | 51365.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
