Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| membrane protein insertase yidc | CAY62_RS14220 | Not Available | Positive | 2999822 - 3001444 | 60663.4 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnme | CAY62_RS14225 | Not Available | Positive | 3001580 - 3002947 | 49944.6 |
| hypothetical protein | CAY62_RS14230 | Not Available | Positive | 3003119 - 3003562 | 17391.7 |
| hypothetical protein | CAY62_RS14235 | Not Available | Positive | 3003766 - 3004275 | 18801.3 |
| duf1998 domain-containing protein | CAY62_RS14240 | Not Available | Negative | 3004493 - 3006610 | 78427.2 |
| is21-like element helper atpase istb | CAY62_RS14245 | Not Available | Negative | 3006666 - 3007424 | 28681.8 |
| is21 family transposase | CAY62_RS14250 | Not Available | Negative | 3007411 - 3008454 | 40000.6 |
| dead/deah box helicase | CAY62_RS14255 | Not Available | Negative | 3008513 - 3012727 | 158282.0 |
| sty4851/ecs_5259 family protein | CAY62_RS14260 | Not Available | Negative | 3012729 - 3016064 | 125930.0 |
| hypothetical protein | CAY62_RS21775 | Not Available | Positive | 3016473 - 3016811 | 12614.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
