Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CAY62_RS16055 | Not Available | Negative | 263120 - 263449 | 12011.6 |
| bifunctional acetate--coa ligase family protein/gnat family n-acetyltransferase | CAY62_RS16060 | Not Available | Negative | 263814 - 266513 | 99257.0 |
| duf2301 domain-containing membrane protein | CAY62_RS16065 | Not Available | Negative | 266635 - 267144 | 18814.3 |
| spor domain-containing protein | CAY62_RS16070 | Not Available | Positive | 267324 - 267911 | 21059.0 |
| sugar o-acetyltransferase | CAY62_RS16075 | Not Available | Positive | 268088 - 268642 | 20231.2 |
| d-alanine--d-alanine ligase | CAY62_RS16080 | Not Available | Positive | 268846 - 269838 | 36756.3 |
| tyrosine-type recombinase/integrase | CAY62_RS16085 | Not Available | Negative | 269930 - 270901 | 37033.6 |
| duf3319 domain-containing protein | CAY62_RS16090 | Not Available | Positive | 271196 - 271555 | 13854.7 |
| atp-dependent zinc protease | CAY62_RS16095 | Not Available | Negative | 271610 - 272116 | 18676.5 |
| had family hydrolase | CAY62_RS16100 | Not Available | Negative | 272215 - 272814 | 22813.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
