Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CAY62_RS20540 | Not Available | Positive | 31128 - 31808 | 26354.8 |
| single-stranded dna-binding protein | CAY62_RS20550 | Not Available | Positive | 32773 - 33144 | 13775.2 |
| duf2726 domain-containing protein | CAY62_RS20555 | Not Available | Positive | 33199 - 33714 | 19258.3 |
| thermonuclease family protein | CAY62_RS20560 | Not Available | Positive | 33721 - 34176 | 16953.5 |
| hypothetical protein | CAY62_RS20565 | Not Available | Positive | 34192 - 34512 | 12366.0 |
| dna topoisomerase 3 | CAY62_RS20570 | Not Available | Positive | 34539 - 36554 | 74670.5 |
| hypothetical protein | CAY62_RS20575 | Not Available | Positive | 36649 - 37125 | 18308.4 |
| atp-binding protein | CAY62_RS20580 | Not Available | Positive | 37270 - 39576 | 88003.9 |
| hypothetical protein | CAY62_RS20585 | Not Available | Positive | 39587 - 39892 | 11675.2 |
| ompa family protein | CAY62_RS20590 | Not Available | Positive | 40095 - 40466 | 14095.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
