Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 23s ribosomal rna | Not Available | Not Available | Positive | 2967242 - 2970134 | Not Available |
| 16s ribosomal rna | Not Available | Not Available | Positive | 2970450 - 2972001 | Not Available |
| menaquinone-dependent protoporphyrinogen ix dehydrogenase | CAY62_RS14080 | Not Available | Negative | 2972441 - 2972974 | 20546.8 |
| trkh family potassium uptake protein | CAY62_RS14085 | Not Available | Negative | 2972984 - 2974441 | 53227.1 |
| yigz family protein | CAY62_RS14090 | Not Available | Negative | 2974479 - 2975096 | 22303.5 |
| fatty acid oxidation complex subunit alpha fadb | CAY62_RS14095 | Not Available | Positive | 2975305 - 2977485 | 79438.8 |
| acetyl-coa c-acyltransferase fada | CAY62_RS14100 | Not Available | Positive | 2977496 - 2978659 | 41234.1 |
| mdr family oxidoreductase | CAY62_RS14105 | Not Available | Positive | 2978861 - 2979841 | 34881.4 |
| lysr family transcriptional regulator | CAY62_RS14110 | Not Available | Negative | 2979925 - 2980869 | 35722.6 |
| hypothetical protein | CAY62_RS14115 | Not Available | Negative | 2980949 - 2981134 | 6932.33 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
