Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminopeptidase p family protein | CAY62_RS13920 | Not Available | Positive | 2940156 - 2941946 | 65497.6 |
| 2-iminoacetate synthase thih | CAY62_RS13925 | Not Available | Negative | 2942044 - 2943156 | 42654.8 |
| thiazole synthase | CAY62_RS13930 | Not Available | Negative | 2943158 - 2943925 | 26676.7 |
| sulfur carrier protein this | CAY62_RS13935 | Not Available | Negative | 2943927 - 2944127 | 7436.96 |
| hesa/moeb/thif family protein | CAY62_RS13940 | Not Available | Negative | 2944111 - 2944896 | 28207.8 |
| thiamine phosphate synthase | CAY62_RS13945 | Not Available | Negative | 2944877 - 2946124 | 46309.6 |
| phosphomethylpyrimidine synthase thic | CAY62_RS13950 | Not Available | Negative | 2946121 - 2948049 | 72142.5 |
| universal stress protein | CAY62_RS13955 | Not Available | Negative | 2948367 - 2948789 | 15610.9 |
| fluoride efflux transporter crcb | CAY62_RS13960 | Not Available | Positive | 2949008 - 2949391 | 13572.2 |
| Trna-pro | Not Available | Not Available | Positive | 2949673 - 2949749 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
