Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cof-type had-iib family hydrolase | CAY62_RS13820 | Not Available | Positive | 2920082 - 2920879 | 29459.1 |
| eve domain-containing protein | CAY62_RS13825 | Not Available | Negative | 2920946 - 2921404 | 17593.2 |
| hypothetical protein | CAY62_RS13830 | Not Available | Positive | 2921480 - 2921926 | 16575.2 |
| pp_02560 | CAY62_RS13835 | Not Available | Positive | 2921986 - 2922567 | Not Available |
| coniferyl aldehyde dehydrogenase | CAY62_RS13840 | Not Available | Positive | 2922680 - 2924140 | 54538.1 |
| putrescine-ornithine antiporter | CAY62_RS13845 | Not Available | Positive | 2924800 - 2926125 | 46722.9 |
| arginine decarboxylase | CAY62_RS13850 | Not Available | Positive | 2926316 - 2928613 | 85497.4 |
| hypothetical protein | CAY62_RS13855 | Not Available | Negative | 2928769 - 2928960 | 7355.85 |
| hypothetical protein | CAY62_RS13860 | Not Available | Negative | 2929336 - 2929689 | 13191.9 |
| porphobilinogen synthase | CAY62_RS13865 | Not Available | Negative | 2929924 - 2930961 | 38202.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
