Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4145 domain-containing protein | CAY62_RS13770 | Not Available | Negative | 2910384 - 2910749 | 14341.4 |
| duf2500 domain-containing protein | CAY62_RS13775 | Not Available | Positive | 2911084 - 2911416 | 12650.4 |
| acyltransferase | CAY62_RS13780 | Not Available | Negative | 2911426 - 2912439 | 38668.9 |
| sdr family oxidoreductase | CAY62_RS13785 | Not Available | Negative | 2912539 - 2913261 | 25968.4 |
| abgt family transporter | CAY62_RS13790 | Not Available | Positive | 2913735 - 2915345 | 57196.1 |
| lysr family transcriptional regulator | CAY62_RS13795 | Not Available | Positive | 2915457 - 2916305 | 31741.7 |
| patatin family protein | CAY62_RS13800 | Not Available | Positive | 2916401 - 2917294 | 33074.5 |
| dps family protein | CAY62_RS13805 | Not Available | Positive | 2917432 - 2917908 | 18312.9 |
| homoserine/homoserine lactone efflux protein | CAY62_RS13810 | Not Available | Negative | 2918160 - 2918777 | 21886.3 |
| alpha/beta fold hydrolase | CAY62_RS13815 | Not Available | Positive | 2918938 - 2919930 | 37839.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
