Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type i-f crispr-associated helicase cas3f | CAY62_RS16005 | Not Available | Positive | 249774 - 253106 | 126484.0 |
| type i-f crispr-associated protein csy1 | CAY62_RS16010 | Not Available | Positive | 253122 - 254423 | 49250.1 |
| type i-f crispr-associated protein csy2 | CAY62_RS16015 | Not Available | Positive | 254423 - 255379 | 35802.5 |
| type i-f crispr-associated protein csy3 | CAY62_RS16020 | Not Available | Positive | 255393 - 256376 | 36410.4 |
| type i-f crispr-associated endoribonuclease cas6/csy4 | CAY62_RS16025 | Not Available | Positive | 256378 - 256932 | 20869.5 |
| alternative ribosome rescue aminoacyl-trna hydrolase arfb | CAY62_RS16030 | Not Available | Positive | 257364 - 257777 | 15556.0 |
| yeih family protein | CAY62_RS16035 | Not Available | Negative | 257830 - 258780 | 33502.1 |
| ydbl family protein | CAY62_RS16040 | Not Available | Negative | 258942 - 259265 | 11751.2 |
| ynbe family lipoprotein | CAY62_RS16045 | Not Available | Negative | 259283 - 259498 | 7904.79 |
| ydbh domain-containing protein | CAY62_RS16050 | Not Available | Negative | 259574 - 262852 | 124330.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
