Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fe-s biogenesis protein nfua | CAY62_RS13615 | Not Available | Positive | 2880815 - 2881393 | 20813.6 |
| 3d domain-containing protein | CAY62_RS13620 | Not Available | Negative | 2881479 - 2881862 | 14254.8 |
| mate family efflux transporter dinf | CAY62_RS13625 | Not Available | Negative | 2881979 - 2883316 | 48971.0 |
| heme o synthase | CAY62_RS13630 | Not Available | Negative | 2883437 - 2884342 | 33315.9 |
| cox15/ctaa family protein | CAY62_RS13635 | Not Available | Negative | 2884335 - 2885384 | 38688.0 |
| hypothetical protein | CAY62_RS13640 | Not Available | Negative | 2885394 - 2885984 | 22039.4 |
| surf1 family protein | CAY62_RS13645 | Not Available | Negative | 2885968 - 2886690 | 28386.8 |
| duf2909 domain-containing protein | CAY62_RS13650 | Not Available | Positive | 2886757 - 2886963 | 7710.94 |
| cytochrome c oxidase subunit 3 | CAY62_RS13655 | Not Available | Negative | 2886967 - 2887842 | 32689.5 |
| cytochrome c oxidase assembly protein | CAY62_RS13660 | Not Available | Negative | 2887852 - 2888448 | 21628.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
