Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna (guanosine(18)-2'-o)-methyltransferase trmh | CAY62_RS13565 | Not Available | Positive | 2869708 - 2870418 | 26243.5 |
| atp-dependent dna helicase recg | CAY62_RS13570 | Not Available | Positive | 2870434 - 2872515 | 77318.6 |
| amino acid abc transporter atp-binding protein | CAY62_RS13575 | Not Available | Positive | 2872604 - 2872855 | 9076.25 |
| two-component system sensor histidine kinase envz | CAY62_RS13580 | Not Available | Negative | 2872977 - 2874329 | 49973.5 |
| two-component system response regulator ompr | CAY62_RS13585 | Not Available | Negative | 2874332 - 2875051 | 27359.3 |
| transcription elongation factor greb | CAY62_RS13590 | Not Available | Positive | 2875485 - 2875961 | 18695.3 |
| tex family protein | CAY62_RS13595 | Not Available | Positive | 2876131 - 2878461 | 85692.9 |
| hypothetical protein | CAY62_RS13600 | Not Available | Negative | 2878610 - 2879062 | 16771.9 |
| pimeloyl-acp methyl ester esterase bioh | CAY62_RS13605 | Not Available | Negative | 2879175 - 2879945 | 28008.0 |
| comf family protein | CAY62_RS13610 | Not Available | Positive | 2879979 - 2880728 | 28712.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
