Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipid iv(a) 3-deoxy-d-manno-octulosonic acid transferase | CAY62_RS13465 | Not Available | Positive | 2852572 - 2853843 | 46989.2 |
| 3-deoxy-d-manno-octulosonic acid kinase | CAY62_RS13470 | Not Available | Negative | 2853840 - 2854544 | 27073.5 |
| glycosyltransferase family 9 protein | CAY62_RS13475 | Not Available | Positive | 2854636 - 2855667 | 38177.1 |
| pantetheine-phosphate adenylyltransferase | CAY62_RS13480 | Not Available | Positive | 2855687 - 2856175 | 18206.0 |
| acyltransferase | CAY62_RS13485 | Not Available | Positive | 2856268 - 2856999 | 27069.7 |
| nad-dependent epimerase | CAY62_RS13490 | Not Available | Negative | 2857042 - 2858046 | 37507.4 |
| bifunctional dna-formamidopyrimidine glycosylase/dna-(apurinic or apyrimidinic site) lyase | CAY62_RS13495 | Not Available | Negative | 2858182 - 2858991 | 29618.0 |
| hypothetical protein | CAY62_RS13500 | Not Available | Negative | 2859016 - 2859495 | 18127.3 |
| 50s ribosomal protein l33 | CAY62_RS13505 | Not Available | Negative | 2859626 - 2859793 | 6377.89 |
| 50s ribosomal protein l28 | CAY62_RS13510 | Not Available | Negative | 2859808 - 2860044 | 9034.13 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
