Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| o-antigen ligase family protein | CAY62_RS13415 | Not Available | Positive | 2842992 - 2844080 | 40528.6 |
| glycosyltransferase family 25 protein | CAY62_RS13420 | Not Available | Positive | 2844077 - 2844826 | 29233.3 |
| glycosyltransferase family 4 protein | CAY62_RS13425 | Not Available | Positive | 2844829 - 2845911 | 40157.1 |
| capsular biosynthesis protein | CAY62_RS13430 | Not Available | Positive | 2845929 - 2846309 | 14312.3 |
| capsular biosynthesis protein | CAY62_RS13435 | Not Available | Positive | 2846300 - 2847892 | 60723.8 |
| glycosyltransferase family 2 protein | CAY62_RS13440 | Not Available | Positive | 2847889 - 2848617 | 28003.0 |
| wave lipopolysaccharide synthesis family protein | CAY62_RS13445 | Not Available | Positive | 2848614 - 2849579 | 37376.1 |
| glycosyltransferase family 2 protein | CAY62_RS13450 | Not Available | Negative | 2849616 - 2850383 | 28949.8 |
| capsular polysaccharide synthesis protein | CAY62_RS13455 | Not Available | Negative | 2850405 - 2851352 | 36716.0 |
| udp-n-acetylglucosamine 2-epimerase | CAY62_RS13460 | Not Available | Negative | 2851353 - 2852408 | 40601.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
