Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lexa family protein | CAY62_RS15965 | Not Available | Positive | 242230 - 242613 | 14505.3 |
| hypothetical protein | CAY62_RS21990 | Not Available | Positive | 242629 - 243012 | 14458.2 |
| duf4113 domain-containing protein | CAY62_RS21995 | Not Available | Positive | 243088 - 243921 | 31805.1 |
| hypothetical protein | CAY62_RS21615 | Not Available | Positive | 244037 - 244186 | 5424.98 |
| helix-turn-helix transcriptional regulator | CAY62_RS15975 | Not Available | Negative | 244227 - 245021 | 30737.8 |
| ybhb/ybcl family raf kinase inhibitor-like protein | CAY62_RS15980 | Not Available | Negative | 245120 - 245599 | 17346.2 |
| recq family atp-dependent dna helicase | CAY62_RS22000 | Not Available | Positive | 245896 - 246033 | 5518.69 |
| is21-like element helper atpase istb | CAY62_RS15990 | Not Available | Negative | 246712 - 247470 | 28681.8 |
| is21 family transposase | CAY62_RS15995 | Not Available | Negative | 247457 - 248500 | 40014.6 |
| type i-f crispr-associated endonuclease cas1f | CAY62_RS16000 | Not Available | Positive | 248803 - 249777 | 36445.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
