Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tryptophan--trna ligase | CAY62_RS13115 | Not Available | Negative | 2778421 - 2779443 | 37623.1 |
| phosphoglycolate phosphatase | CAY62_RS13120 | Not Available | Negative | 2779541 - 2780230 | 25134.2 |
| ribulose-phosphate 3-epimerase | CAY62_RS13125 | Not Available | Negative | 2780230 - 2780904 | 24789.1 |
| duf2970 domain-containing protein | CAY62_RS13130 | Not Available | Positive | 2781049 - 2781246 | 7352.46 |
| adenine-specific dna-methyltransferase | CAY62_RS13135 | Not Available | Negative | 2781230 - 2782072 | 32225.3 |
| spor domain-containing protein | CAY62_RS13140 | Not Available | Negative | 2782180 - 2783691 | 55832.2 |
| 3-dehydroquinate synthase | CAY62_RS13145 | Not Available | Negative | 2783706 - 2784785 | 38812.9 |
| shikimate kinase arok | CAY62_RS13150 | Not Available | Negative | 2784815 - 2785333 | 19524.2 |
| amino acid abc transporter atp-binding protein | CAY62_RS13155 | Not Available | Negative | 2785663 - 2786550 | 31356.7 |
| is21 family transposase | CAY62_RS13160 | Not Available | Positive | 2786652 - 2787695 | 40000.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
