Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| wd40 repeat domain-containing protein | CAY62_RS13020 | Not Available | Positive | 2760563 - 2761540 | 35414.3 |
| slyx family protein | CAY62_RS13025 | Not Available | Positive | 2761547 - 2761768 | 8609.45 |
| peptidylprolyl isomerase | CAY62_RS13030 | Not Available | Negative | 2761848 - 2762417 | 19956.1 |
| yhev family putative zinc ribbon protein | CAY62_RS13035 | Not Available | Negative | 2762491 - 2762700 | 8024.49 |
| glutathione-regulated potassium-efflux system protein kefb | CAY62_RS13040 | Not Available | Negative | 2762741 - 2764561 | 65970.2 |
| glutathione-regulated potassium-efflux system ancillary protein kefg | CAY62_RS13045 | Not Available | Negative | 2764551 - 2765132 | 22184.7 |
| abc transporter atp-binding protein | CAY62_RS13050 | Not Available | Positive | 2765359 - 2767287 | 73239.6 |
| hypothetical protein | CAY62_RS22255 | Not Available | Positive | 2767439 - 2767642 | 7676.53 |
| yheu family protein | CAY62_RS13060 | Not Available | Positive | 2767683 - 2767898 | 8201.75 |
| phosphoribulokinase | CAY62_RS13065 | Not Available | Positive | 2768032 - 2768901 | 32739.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
