Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s10 | CAY62_RS12970 | Not Available | Negative | 2752091 - 2752402 | 11725.3 |
| elongation factor tu | CAY62_RS12975 | Not Available | Negative | 2752915 - 2754099 | 43024.6 |
| elongation factor g | CAY62_RS12980 | Not Available | Negative | 2754199 - 2756304 | 77737.3 |
| 30s ribosomal protein s7 | CAY62_RS12985 | Not Available | Negative | 2756401 - 2756871 | 17687.6 |
| 30s ribosomal protein s12 | CAY62_RS12990 | Not Available | Negative | 2756972 - 2757346 | 13709.8 |
| sulfurtransferase complex subunit tusb | CAY62_RS12995 | Not Available | Negative | 2757523 - 2757816 | 11111.1 |
| sulfurtransferase complex subunit tusc | CAY62_RS13000 | Not Available | Negative | 2757824 - 2758180 | 13223.0 |
| sulfurtransferase complex subunit tusd | CAY62_RS13005 | Not Available | Negative | 2758192 - 2758584 | 14108.6 |
| transcriptional regulator | CAY62_RS13010 | Not Available | Negative | 2758581 - 2759303 | 26736.9 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | CAY62_RS13015 | Not Available | Negative | 2759501 - 2760373 | 31292.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
