Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tyrosine-protein kinase family protein | CAY62_RS12820 | Not Available | Positive | 2735563 - 2736246 | 26220.7 |
| response regulator | CAY62_RS12825 | Not Available | Positive | 2736243 - 2737715 | 56515.0 |
| glycosyltransferase family 4 protein | CAY62_RS12830 | Not Available | Negative | 2737689 - 2738663 | 36935.0 |
| 50s ribosomal protein l17 | CAY62_RS12835 | Not Available | Negative | 2738756 - 2739142 | 14536.7 |
| dna-directed rna polymerase subunit alpha | CAY62_RS12840 | Not Available | Negative | 2739176 - 2740165 | 36341.5 |
| 30s ribosomal protein s4 | CAY62_RS12845 | Not Available | Negative | 2740189 - 2740809 | 23395.3 |
| 30s ribosomal protein s11 | CAY62_RS12850 | Not Available | Negative | 2740843 - 2741232 | 13892.8 |
| 30s ribosomal protein s13 | CAY62_RS12855 | Not Available | Negative | 2741252 - 2741608 | 13264.3 |
| 50s ribosomal protein l36 | CAY62_RS12860 | Not Available | Negative | 2741754 - 2741867 | 4278.5 |
| preprotein translocase subunit secy | CAY62_RS12865 | Not Available | Negative | 2741897 - 2743222 | 48158.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
