Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methylenetetrahydrofolate reductase | CAY62_RS15915 | Not Available | Positive | 232039 - 233058 | 38733.3 |
| mfs transporter | CAY62_RS15920 | Not Available | Negative | 233128 - 234438 | 47691.2 |
| c-type cytochrome | CAY62_RS15925 | Not Available | Negative | 234905 - 235231 | 12087.5 |
| lecithin retinol acyltransferase family protein | CAY62_RS15930 | Not Available | Positive | 235382 - 235879 | 18046.9 |
| nudix hydrolase | CAY62_RS15935 | Not Available | Negative | 235874 - 236392 | 19589.4 |
| ggdef domain-containing protein | CAY62_RS15940 | Not Available | Negative | 236559 - 237632 | 40272.0 |
| alpha/beta fold hydrolase | CAY62_RS15945 | Not Available | Negative | 237825 - 238310 | 18150.7 |
| udp-glucose 4-epimerase gale | CAY62_RS15950 | Not Available | Positive | 238584 - 239600 | 36959.7 |
| dead/deah box helicase | CAY62_RS15955 | Not Available | Positive | 239823 - 241169 | 51109.8 |
| spor domain-containing protein | CAY62_RS15960 | Not Available | Negative | 241382 - 241924 | 20010.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
