Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type 4a pilus biogenesis protein pilo | CAY62_RS12670 | Not Available | Negative | 2696593 - 2697228 | 23914.1 |
| piln domain-containing protein | CAY62_RS12675 | Not Available | Negative | 2697225 - 2698625 | 52411.2 |
| rnase e specificity factor csrd | CAY62_RS12680 | Not Available | Negative | 2698841 - 2700781 | 73240.7 |
| single-stranded dna-binding protein | CAY62_RS12685 | Not Available | Negative | 2700932 - 2701480 | 20102.5 |
| excinuclease abc subunit uvra | CAY62_RS12690 | Not Available | Positive | 2701747 - 2704572 | 104069.0 |
| pgll family o-oligosaccharyltransferase | CAY62_RS12695 | Not Available | Positive | 2704725 - 2706476 | 66767.2 |
| pyridoxal-phosphate-dependent aminotransferase family protein | CAY62_RS12700 | Not Available | Negative | 2706530 - 2707648 | 40631.0 |
| lysine-sensitive aspartokinase 3 | CAY62_RS12705 | Not Available | Positive | 2708199 - 2709578 | 49429.6 |
| methionine synthase | CAY62_RS12710 | Not Available | Negative | 2709638 - 2713303 | 135192.0 |
| cation:proton antiporter | CAY62_RS12715 | Not Available | Positive | 2713500 - 2714780 | 46600.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
